Maize B73 RefGen_v2: Chr1:34400..530000

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Instructions Instructions Searching: Search using a sequence name, gene name, locus, or other landmark. The wildcard character * is allowed. Navigation: Click one of the rulers to center on a location, or click and drag to select a region. Use the Scroll/Zoom buttons to change magnification and position. Examples: Chr1:34,400..530,000, Chr2:2,000,000..4,000,000, Chr3:194343000..194350000, UNMAPPED:34,400..530,000, Centromere1, GRMZM2G100969, GRMZM5G859979, GRMZM5G816453, MAGIv4.0_76504, AC177838.2, GRMZM2G104572_T01, GRMZM2G089944, Chr1:2993000..3044000, mu-illumina_11900, Mt:59000..86000, Cp:90000..130000, MIR2118e.
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Instructions

Searching: Search using a sequence name, gene name, locus, or other landmark. The wildcard character * is allowed.
Navigation: Click one of the rulers to center on a location, or click and drag to select a region. Use the Scroll/Zoom buttons to change magnification and position.

Examples: Chr1:34,400..530,000, Chr2:2,000,000..4,000,000, Chr3:194343000..194350000, UNMAPPED:34,400..530,000, Centromere1, GRMZM2G100969, GRMZM5G859979, GRMZM5G816453, MAGIv4.0_76504, AC177838.2, GRMZM2G104572_T01, GRMZM2G089944, Chr1:2993000..3044000, mu-illumina_11900, Mt:59000..86000, Cp:90000..130000, MIR2118e.

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Details

B73 RefGen_v2 [from MGSC and AGI] Pseudomolecule detail

Gaps in the B73 RefGen_v2 [from MGSC and AGI] Gap detail

MAGI [from the Schnable Lab] MAGI detail

PlantGDB Unique Transcripts (PUTs)

ESTs [from PlantGDB]

cDNA [from PlantGDB] cDNA detail

B73 RefGen_v2 Gene Models: Filtered Gene Set (green) and Working Gene Set (yellow) [from MaizeSequence.org] Gene_models detail

B73 RefGen_v2 Gene Models: Quality (ZmGDB_v175 Gene Models) Filtered_genes_quality detail

Bins

ISU Integrated IBM2009 Markers [from the Schnable Lab] IBM2009 detail

GSS_PlantGDB GSS_PlantGDB detail

Heritable Mu Insertions [from the Mu-Illumina Group] Mu_Illumina detail

UniformMu (Release 4.6) [from the UniformMu Group] UniformMU detail

Ac/Ds [Brutnell and Vollbrecht, via PlantGDB] AcDs detail

Agilent 4x44K maize microarray probes [from the Walbot Lab] Microarray detail

Microarray Probes at PLEXdb [aligned by PlantGDB]

Centromere [from Jiang/Presting]


Landmark or Region:	Reports & Analysis:
Data Source	Scroll/Zoom: Flip

Affymetrix Maize100WT Probe Sets [from the Wise group/PLEXdb]	B73 -1 cm from Leaf Ligule [from the Brutnell Group]	LCM leaf tip (bundle-sheath) [from the Brutnell Group]	miRNA [from mirBASE]
Affymetrix Maize100WT Probes [from the Wise group/PLEXdb]	B73 Leaf Base [from the Brutnell Group]	LCM leaf tip (mesophyll) [from the Brutnell Group]	PlantGDB Unique Transcripts (PUTs)
Affymetrix Maize100WT Source Sequence [from the Wise group/PLEXdb; assembly B73 RefGen_v1 and MaizeSequence.org annotations 4.53a]	B73 Leaf Tip [from the Brutnell Group]	Maize Gene Atlas Coefficient of Variation by Probe [PLEXdb/MaizeGDB Collaboration]	Shoot Apical Meristem at Six Stages [from the Scanlon lab - SAM Group]
Agilent 4x44K maize microarray probes [from the Walbot Lab]	cDNA [from PlantGDB]	Maize Gene Atlas Expression Across Tissues by Probe [PLEXdb/MaizeGDB Collaboration]
Anther Stages: 1mm (red), 1.5mm (blue), 2mm (yellow), pollen (green)	ESTs [from PlantGDB]	Maize Gene Atlas Maximum Mean Normalized Expression by Probe [PLEXdb/MaizeGDB Collaboration]
B73 +4cm from Leaf Ligule [from the Brutnell Group]	Genome-wide Expression Atlas [NimbleGen from the Kaeppler Group, PLEXdb/MaizeGDB Collaboration]	Microarray Probes at PLEXdb [aligned by PlantGDB]

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Draggable tracks	Key position Between Beneath Left Right	Region Size (bp)
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Showing 495.6 kbp from Chr1, positions 34,400 to 530,000

NOTES

anti-CENH3 ChIP [from Jiang/Presting]	Centromere [from Jiang/Presting]	GSS_PlantGDB	Reconstructed Chromosomes from the Maize Tetraploidy [from J. Schnable and M. Freeling]
B73 RefGen_v2 [from MGSC and AGI]	Chloroplast (strain ??)	Mitochondria (strain NB)
Bins	Gaps in the B73 RefGen_v2 [from MGSC and AGI]	Nucleosome Occupancy Likelihood (FSU HsA375.ZmB73rg2) [from Bass & Dennis, FSU]